Payroll corrections happen in every business. Missed timesheets, leave coding errors, and rate changes are common (especially in hospitality, retail, healthcare, and multi-award environments).
The key is fixing them accurately, transparently, and compliantly.
ClockOn Online makes this manageable because:
• Tax recalculates automatically when earnings change
• Super calculates based on updated earnings
• Leave accrues according to your configured Ruleset
• STP reporting remains aligned with actual payments
Before making any adjustment:
- Print or preview the original payslip
- Confirm the correct ATO tax table is being used
- Confirm the employee’s Ruleset (leave accrual + super settings)
1. Missed Timesheets (Prior Period Hours)

Scenario
Employee: Bar Assistant
Original Period: 7 Oct – 13 Oct
Issue: 4 hours missed on Wednesday
What Needs To Happen
• Pay the additional 4 hours
• Accrue leave correctly (if Ruleset is Pro-Rata)
• Ensure PAYG is correct
• Ensure Super is correct
Real Example
Employee paid $25 per hour
4 hours missed = $100 additional gross
Original gross: $1,000
Correct gross should have been: $1,100
When you add $100 into the next pay run, ClockOn recalculates PAYG automatically based on the total taxable earnings.
If tax originally withheld was $180 and correct tax should have been $198, the system adjusts accordingly.
Super will also calculate automatically on the additional $100 (e.g. 11.5% = $11.50 additional super).
How To Process in ClockOn Online
- Go to Payroll
- Create the next pay run
- Untick “Include All Employees”
- Select the employee
- Add the missed hours via Timesheets or manual earnings line
- Confirm leave accrual is correct
If leave should NOT accrue, process as a “No Entitlements Payroll”.
If a tax difference is required beyond what the system calculates:
• Add an Allowance
• Type: Additional Tax
• Tick “Pay in next pay only”
Why This Is Beneficial
Without automation, businesses manually calculate tax differences using ATO tables and risk under-withholding.
ClockOn recalculates in real time, reducing ATO exposure and ensuring STP reflects accurate year-to-date figures.
For businesses processing 20–100 staff per week, this saves hours of reconciliation.
2. Leave Adjustment (Incorrect Leave Type)
Scenario
Employee paid Annual Leave + Leave Loading
Should have been Personal Leave
What Needs To Happen
• Adjust leave balances
• Recover leave loading amount
• Adjust PAYG if required
• Confirm super treatment
Real Example
Employee earned:
$220 Annual Leave
$38 Leave Loading
Leave Loading should not have been paid.
You need to recover $38 gross.
Step 1 – Adjust Leave Balances
In ClockOn Online:
- Go to Employee Profile
- Select Leave
- Adjust Annual Leave balance (add hours back)
- Reduce Personal Leave balance
- Add a note in Employee Notes explaining adjustment
This ensures your leave ledger remains audit-ready.
Step 2 – Recover Leave Loading
In the next pay run:
- Add Before Tax Deduction
Example: “Leave Loading Adjustment”
Amount: $38
Tick “Pay in next pay only” - Review the Pay Advice window
Note original tax amount before adjustment
If tax needs correcting:
• Add a Tax Adjustment Allowance
• Reduce or increase tax as required
Super will recalculate automatically unless your Ruleset includes Leave Loading in OTE.
Why This Matters
Incorrect leave coding affects:
• Leave liabilities
• Super obligations
• Financial reporting
• Fair Work compliance
ClockOn’s structured leave tracking prevents compounding errors over time.
For growing businesses, this protects against audit risk and underpayment claims.
3. Back Pay (Rate Increase Correction)
Scenario
Employee paid $21/hr
Should have been $23/hr
Applies to 2 previous pay periods
Real Example
40 hours per period
Difference = $2 per hour
$2 × 40 × 2 periods = $160 gross underpayment
What Needs To Happen
• Pay $160 back pay
• Ensure PAYG reflects correct withholding
• Ensure Super reflects updated earnings
How To Process in ClockOn Online
- Create next payroll
- Review Pay Advice window before adjustments
- Add Before Tax Allowance
Example: “Back Pay Rate Adjustment”
Amount: $160
Tick “Pay in next pay only”
ClockOn recalculates tax based on the new gross.
If total PAYG required across the original and adjusted payroll should be $234, and the system calculates $210, add:
• Additional Tax Allowance
• Difference required
• Tick “Pay in next pay only”
Super will calculate automatically on the additional $160 unless the earnings are non-OTE.
If required, employer super can be manually adjusted in the Pay Advice window.
Why This Is Critical
Underpayments are one of the highest-risk compliance issues in Australia.
Businesses have faced:
• Fair Work penalties
• Super Guarantee Charge penalties
• Reputational damage
ClockOn reduces risk by:
• Automatically recalculating tax
• Automatically recalculating super
• Keeping STP year-to-date figures aligned
• Maintaining transparent payroll records
For operators managing multiple awards or rate changes, this is a significant operational safeguard.
HOW WE Make Adjustments Easier
Manual payroll systems require:
• Spreadsheet reconciliation
• ATO table cross-checking
• Separate super recalculations
• Manual STP correction handling
ClockOn consolidates all of this in one system:
• Real-time tax calculation
• Configurable Rulesets
• Automated leave accrual logic
• Super integration
• STP reporting built in
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For businesses running weekly or fortnightly payroll, especially in hospitality, retail, healthcare, or construction, this can mean the difference between:
Controlled compliance
and
Costly correction cycles





